IL_9GXX_163

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9GXX|1|a|U|2689, 9GXX|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_163 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0605

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9GXX|1|a|U|2687
9GXX|1|a|G|2688
9GXX|1|a|U|2689
9GXX|1|a|U|2690
9GXX|1|a|C|2691
*
9GXX|1|a|G|2718
9GXX|1|a|G|2719
9GXX|1|a|U|2720
9GXX|1|a|A|2721
9GXX|1|a|G|2722

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19