IL_9GY4_040
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAUC*GCGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_040 not in the Motif Atlas
- Geometric match to IL_3BBM_001
- Geometric discrepancy: 0.3787
- The information below is about IL_3BBM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.2
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GY4|1|5|G|1425
9GY4|1|5|G|1426
9GY4|1|5|A|1427
9GY4|1|5|U|1428
9GY4|1|5|C|1429
*
9GY4|1|5|G|1455
9GY4|1|5|C|1456
9GY4|1|5|G|1457
9GY4|1|5|C|1458
9GY4|1|5|A|1459
9GY4|1|5|C|1460
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- 60S ribosomal protein L29
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