IL_9GY4_058
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_058 not in the Motif Atlas
- Homologous match to IL_8CRE_044
- Geometric discrepancy: 0.135
- The information below is about IL_8CRE_044
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
9GY4|1|5|A|1746
9GY4|1|5|U|1747
9GY4|1|5|U|1748
9GY4|1|5|A|1749
*
9GY4|1|5|U|1781
9GY4|1|5|U|1782
9GY4|1|5|C|1783
9GY4|1|5|U|1784
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Transfer RNA; tRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- Ribosomal protein uL16-like
Coloring options: