IL_9H0L_133

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9H0L|1|a|A|1801, 9H0L|1|a|C|1816, 9H0L|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H0L_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0555

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9H0L|1|a|U|1798
9H0L|1|a|G|1799
9H0L|1|a|C|1800
9H0L|1|a|A|1801
9H0L|1|a|A|1802
9H0L|1|a|A|1803
9H0L|1|a|C|1804
*
9H0L|1|a|G|1813
9H0L|1|a|G|1814
9H0L|1|a|A|1815
9H0L|1|a|C|1816
9H0L|1|a|G|1817
9H0L|1|a|U|1818
9H0L|1|a|A|1819
9H0L|1|a|U|1820
9H0L|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2