IL_9H3G_044
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- CGGGUAA*(PSU)AAA(OMU)AG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9H3G|1|A|C|1002
9H3G|1|A|G|1003
9H3G|1|A|G|1004
9H3G|1|A|G|1005
9H3G|1|A|U|1006
9H3G|1|A|A|1007
9H3G|1|A|A|1008
*
9H3G|1|A|PSU|1062
9H3G|1|A|A|1063
9H3G|1|A|A|1064
9H3G|1|A|A|1065
9H3G|1|A|OMU|1066
9H3G|1|A|A|1067
9H3G|1|A|G|1068
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AL
- Ribosomal protein L18ae/LX family protein
- Chain AM
- Large ribosomal subunit protein eL21z/eL21y
- Chain BJ
- Large ribosomal subunit protein uL16y
- Chain BK
- Large ribosomal subunit protein uL18z
- Chain BR
- Ribosomal protein L30/L7 family protein
- Chain C3
- 5S ribosomal RNA; 5S rRNA
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