IL_9H3K_006

3D structure

PDB id

9H3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor d126_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3K_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2687

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9H3K|1|A|G|188
9H3K|1|A|G|189
9H3K|1|A|A|190
9H3K|1|A|A|191
9H3K|1|A|C|192
9H3K|1|A|U|193
9H3K|1|A|G|194
*
9H3K|1|A|C|201
9H3K|1|A|U|202
9H3K|1|A|A|203
9H3K|1|A|A|204
9H3K|1|A|G|205
9H3K|1|A|U|206
9H3K|1|A|A|207
9H3K|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains