IL_9H3K_007

3D structure

PDB id

9H3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor d126_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

CCCAGUAG*CGAACGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3K_007 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.3141

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9H3K|1|A|C|238
9H3K|1|A|C|239
9H3K|1|A|C|240
9H3K|1|A|A|241
9H3K|1|A|G|242
9H3K|1|A|U|243
9H3K|1|A|A|244
9H3K|1|A|G|245
*
9H3K|1|A|C|253
9H3K|1|A|G|254
9H3K|1|A|A|255
9H3K|1|A|A|256
9H3K|1|A|C|257
9H3K|1|A|G|258
9H3K|1|A|G|259

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15