IL_9H3K_039

3D structure

PDB id

9H3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor d126_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

9H3K|1|A|G|2668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3K_039 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.4968

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9H3K|1|A|C|2651
9H3K|1|A|C|2652
9H3K|1|A|U|2653
9H3K|1|A|A|2654
9H3K|1|A|G|2655
9H3K|1|A|U|2656
9H3K|1|A|A|2657
9H3K|1|A|C|2658
*
9H3K|1|A|G|2663
9H3K|1|A|G|2664
9H3K|1|A|A|2665
9H3K|1|A|C|2666
9H3K|1|A|C|2667
9H3K|1|A|G|2668
9H3K|1|A|G|2669

Current chains

Chain A

23S ribosomal RNA

Nearby chains