IL_9H3O_019

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9H3O|1|A|G|776, 9H3O|1|A|A|788, 9H3O|1|A|A|789, 9H3O|1|A|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3O_019 not in the Motif Atlas

Geometric match to IL_8VTW_022

Geometric discrepancy: 0.3686

The information below is about IL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9H3O|1|A|G|775
9H3O|1|A|G|776
9H3O|1|A|G|777
*
9H3O|1|A|C|787
9H3O|1|A|A|788
9H3O|1|A|A|789
9H3O|1|A|U|790
9H3O|1|A|C|791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34