IL_9H3Q_007

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Q_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1666

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9H3Q|1|A|C|239
9H3Q|1|A|C|240
9H3Q|1|A|A|241
9H3Q|1|A|G|242
9H3Q|1|A|U|243
9H3Q|1|A|A|244
9H3Q|1|A|G|245
*
9H3Q|1|A|C|253
9H3Q|1|A|G|254
9H3Q|1|A|A|255
9H3Q|1|A|A|256
9H3Q|1|A|C|257
9H3Q|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15