IL_9H3Q_010

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Q_010 not in the Motif Atlas

Homologous match to IL_9DFE_011

Geometric discrepancy: 0.225

The information below is about IL_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

9H3Q|1|A|U|293
9H3Q|1|A|A|294
9H3Q|1|A|G|295
*
9H3Q|1|A|C|343
9H3Q|1|A|A|344
9H3Q|1|A|A|345
9H3Q|1|A|A|346
9H3Q|1|A|A|347

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24