IL_9H3Q_060

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9H3Q|1|A|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Q_060 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.124

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9H3Q|1|A|U|2081
9H3Q|1|A|A|2082
9H3Q|1|A|G|2083
*
9H3Q|1|A|U|2236
9H3Q|1|A|G|2237
9H3Q|1|A|G|2238
9H3Q|1|A|G|2239

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

UPF0307 protein YjgA

Chain X

Large ribosomal subunit protein bL28