IL_9H3Q_067

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Q_067 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.3626

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9H3Q|1|A|A|2297
9H3Q|1|A|A|2298
9H3Q|1|A|U|2299
*
9H3Q|1|A|A|2317
9H3Q|1|A|G|2318
9H3Q|1|A|G|2319
9H3Q|1|A|U|2320
9H3Q|1|A|U|2321

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

Large ribosomal subunit protein uL5

Chain W

Large ribosomal subunit protein bL27