3D structure

PDB id
9H3Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_YjgA_(L22)-~H61
Experimental method
ELECTRON MICROSCOPY
Resolution
4.02 Å

Loop

Sequence
CUC*GCGAG
Length
8 nucleotides
Bulged bases
9H3Q|1|A|G|2576, 9H3Q|1|A|A|2577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H3Q_074 not in the Motif Atlas
Homologous match to IL_9DFE_097
Geometric discrepancy: 0.326
The information below is about IL_9DFE_097
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

9H3Q|1|A|C|2510
9H3Q|1|A|U|2511
9H3Q|1|A|C|2512
*
9H3Q|1|A|G|2574
9H3Q|1|A|C|2575
9H3Q|1|A|G|2576
9H3Q|1|A|A|2577
9H3Q|1|A|G|2578

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3

Coloring options:


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