IL_9H3T_069

3D structure

PDB id

9H3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_L2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9H3T|1|A|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3T_069 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1653

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9H3T|1|A|C|2636
9H3T|1|A|U|2637
9H3T|1|A|G|2638
9H3T|1|A|A|2639
9H3T|1|A|G|2640
*
9H3T|1|A|C|2774
9H3T|1|A|G|2775
9H3T|1|A|A|2776
9H3T|1|A|G|2777
9H3T|1|A|A|2778
9H3T|1|A|U|2779
9H3T|1|A|G|2780
9H3T|1|A|A|2781
9H3T|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13