IL_9H3V_004

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UAAG*CGUUAUAA

Length

12 nucleotides

Bulged bases

9H3V|1|A|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3V_004 not in the Motif Atlas

Geometric match to IL_1U63_003

Geometric discrepancy: 0.3986

The information below is about IL_1U63_003

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_24134.1

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9H3V|1|A|U|82
9H3V|1|A|A|83
9H3V|1|A|A|84
9H3V|1|A|G|85
*
9H3V|1|A|C|97
9H3V|1|A|G|98
9H3V|1|A|U|99
9H3V|1|A|U|100
9H3V|1|A|A|101
9H3V|1|A|U|102
9H3V|1|A|A|103
9H3V|1|A|A|104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24

Chain Y

Large ribosomal subunit protein uL29