IL_9H3W_045

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9H3W|1|A|G|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_045 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2079

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9H3W|1|A|C|1319
9H3W|1|A|C|1320
9H3W|1|A|A|1321
9H3W|1|A|A|1322
9H3W|1|A|C|1323
*
9H3W|1|A|G|1331
9H3W|1|A|G|1332
9H3W|1|A|G|1333

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL22

Chain T

Large ribosomal subunit protein uL23