IL_9H3W_051

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9H3W|1|A|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_051 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2688

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9H3W|1|A|G|1432
9H3W|1|A|A|1433
9H3W|1|A|A|1434
9H3W|1|A|G|1435
*
9H3W|1|A|C|1557
9H3W|1|A|C|1558
9H3W|1|A|U|1559
9H3W|1|A|G|1560
9H3W|1|A|C|1561

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2