IL_9H3W_061

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_061 not in the Motif Atlas

Geometric match to IL_4V9F_008

Geometric discrepancy: 0.2445

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

9H3W|1|A|G|1666
9H3W|1|A|G|1667
9H3W|1|A|A|1668
9H3W|1|A|A|1669
*
9H3W|1|A|U|1993
9H3W|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14