IL_9H3W_072

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_072 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.2119

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9H3W|1|A|U|1851
9H3W|1|A|U|1852
9H3W|1|A|A|1853
9H3W|1|A|A|1854
9H3W|1|A|U|1855
9H3W|1|A|U|1856
9H3W|1|A|G|1857
9H3W|1|A|A|1858
9H3W|1|A|U|1859
9H3W|1|A|G|1860
*
9H3W|1|A|U|1882
9H3W|1|A|U|1883
9H3W|1|A|G|1884
9H3W|1|A|A|1885
9H3W|1|A|U|1886
9H3W|1|A|C|1887
9H3W|1|A|G|1888
9H3W|1|A|A|1889
9H3W|1|A|A|1890
9H3W|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains