IL_9H3X_034

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9H3X|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3X_034 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.264

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9H3X|1|A|U|1018
9H3X|1|A|U|1019
9H3X|1|A|A|1020
9H3X|1|A|A|1021
9H3X|1|A|G|1022
9H3X|1|A|U|1023
9H3X|1|A|G|1024
*
9H3X|1|A|C|1140
9H3X|1|A|U|1141
9H3X|1|A|A|1142
9H3X|1|A|A|1143
9H3X|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13