IL_9H3X_066

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9H3X|1|A|A|1801, 9H3X|1|A|C|1816, 9H3X|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3X_066 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1657

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9H3X|1|A|U|1798
9H3X|1|A|G|1799
9H3X|1|A|C|1800
9H3X|1|A|A|1801
9H3X|1|A|A|1802
9H3X|1|A|A|1803
9H3X|1|A|C|1804
*
9H3X|1|A|G|1813
9H3X|1|A|G|1814
9H3X|1|A|A|1815
9H3X|1|A|C|1816
9H3X|1|A|G|1817
9H3X|1|A|U|1818
9H3X|1|A|A|1819
9H3X|1|A|U|1820
9H3X|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2