IL_9H51_028

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

9H51|1|A|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H51_028 not in the Motif Atlas

Geometric match to IL_9PN5_195

Geometric discrepancy: 0.2694

The information below is about IL_9PN5_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9H51|1|A|G|1175
9H51|1|A|G|1176
*
9H51|1|A|U|1477
9H51|1|A|A|1478
9H51|1|A|C|1479

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain D

28S ribosomal protein S5, mitochondrial