IL_9H51_035

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

9H51|1|A|C|1330, 9H51|1|A|A|1331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H51_035 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.161

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9H51|1|A|C|1262
9H51|1|A|G|1263
*
9H51|1|A|U|1329
9H51|1|A|C|1330
9H51|1|A|A|1331
9H51|1|A|A|1332
9H51|1|A|G|1333

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain C

28S ribosomal protein S24, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial