IL_9H51_041

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

9H51|1|A|C|1484, 9H51|1|A|U|1568

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H51_041 not in the Motif Atlas

Geometric match to IL_8GLP_274

Geometric discrepancy: 0.133

The information below is about IL_8GLP_274

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9H51|1|A|C|1483
9H51|1|A|C|1484
9H51|1|A|G|1485
*
9H51|1|A|C|1566
9H51|1|A|A|1567
9H51|1|A|U|1568
9H51|1|A|G|1569

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain a

Putative ribosome-binding factor A, mitochondrial