IL_9H52_009

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H52_009 not in the Motif Atlas

Geometric match to IL_1NTA_003

Geometric discrepancy: 0.2063

The information below is about IL_1NTA_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9H52|1|A|G|762
9H52|1|A|C|763
9H52|1|A|A|764
9H52|1|A|C|765
*
9H52|1|A|G|777
9H52|1|A|C|778

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 9

Nitric oxide-associated protein 1

Chain N

28S ribosomal protein S17, mitochondrial