IL_9H52_016

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9H52|1|A|C|904, 9H52|1|A|C|906, 9H52|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H52_016 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.3579

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9H52|1|A|G|887
9H52|1|A|U|888
9H52|1|A|G|889
9H52|1|A|C|890
9H52|1|A|C|891
9H52|1|A|A|892
9H52|1|A|G|893
*
9H52|1|A|C|900
9H52|1|A|G|901
9H52|1|A|G|902
9H52|1|A|U|903
9H52|1|A|C|904
9H52|1|A|A|905
9H52|1|A|C|906
9H52|1|A|A|907
9H52|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Isoform 2 of Ribosome assembly protein METTL17, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial