IL_9H52_020

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H52_020 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.3273

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9H52|1|A|G|1062
9H52|1|A|A|1063
9H52|1|A|C|1064
9H52|1|A|C|1065
9H52|1|A|C|1066
*
9H52|1|A|G|1092
9H52|1|A|C|1093

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial