IL_9H54_016

3D structure

PDB id

9H54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and partial RBFA (state N2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9H54|1|A|C|904, 9H54|1|A|C|906, 9H54|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H54_016 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.4385

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9H54|1|A|G|887
9H54|1|A|U|888
9H54|1|A|G|889
9H54|1|A|C|890
9H54|1|A|C|891
9H54|1|A|A|892
9H54|1|A|G|893
*
9H54|1|A|C|900
9H54|1|A|G|901
9H54|1|A|G|902
9H54|1|A|U|903
9H54|1|A|C|904
9H54|1|A|A|905
9H54|1|A|C|906
9H54|1|A|A|907
9H54|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial