IL_9H6I_150

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6I_150 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.1374

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

9H6I|1|C3|A|32
9H6I|1|C3|U|33
9H6I|1|C3|C|34
9H6I|1|C3|C|35
9H6I|1|C3|C|36
*
9H6I|1|C3|G|41
9H6I|1|C3|A|42
9H6I|1|C3|A|43
9H6I|1|C3|C|44
9H6I|1|C3|U|45

Current chains

Chain C3

Ribosomal RNA 5S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BK

Large ribosomal subunit protein uL18z

Chain BU

Large ribosomal subunit protein uL5z