IL_9H6Y_012

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9H6Y|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_012 not in the Motif Atlas

Homologous match to IL_9H3G_165

Geometric discrepancy: 0.1332

The information below is about IL_9H3G_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9H6Y|1|2|G|145
9H6Y|1|2|G|146
9H6Y|1|2|A|147
9H6Y|1|2|U|148
9H6Y|1|2|A|149
9H6Y|1|2|A|150
9H6Y|1|2|C|151
*
9H6Y|1|2|G|167
9H6Y|1|2|C|168
9H6Y|1|2|U|169
9H6Y|1|2|A|170
9H6Y|1|2|A|171
9H6Y|1|2|U|172
9H6Y|1|2|A|173
9H6Y|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS6

Chain a

40S ribosomal protein S24