IL_9H6Y_019
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9H6Y|1|2|U|351, 9H6Y|1|2|C|389, 9H6Y|1|2|C|390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H6Y_019 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.1415
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9H6Y|1|2|U|349
9H6Y|1|2|A|350
9H6Y|1|2|U|351
9H6Y|1|2|C|352
9H6Y|1|2|A|353
9H6Y|1|2|A|354
*
9H6Y|1|2|U|386
9H6Y|1|2|G|387
9H6Y|1|2|A|388
9H6Y|1|2|C|389
9H6Y|1|2|C|390
9H6Y|1|2|A|391
9H6Y|1|2|C|392
9H6Y|1|2|G|393
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Small ribosomal subunit protein eS8
- Chain N
- Small ribosomal subunit protein uS17
- Chain Z
- Small ribosomal subunit protein uS12
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