IL_9H6Y_029

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_029 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.2658

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9H6Y|1|2|G|525
9H6Y|1|2|A|526
9H6Y|1|2|C|527
*
9H6Y|1|2|G|536
9H6Y|1|2|G|537
9H6Y|1|2|C|538

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein