IL_9H6Y_034

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9H6Y|1|2|A|618, 9H6Y|1|2|U|620, 9H6Y|1|2|U|621

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_034 not in the Motif Atlas

Homologous match to IL_9H3G_187

Geometric discrepancy: 0.1434

The information below is about IL_9H3G_187

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9H6Y|1|2|G|601
9H6Y|1|2|U|602
9H6Y|1|2|C|603
9H6Y|1|2|G|604
9H6Y|1|2|C|605
9H6Y|1|2|A|606
9H6Y|1|2|G|607
*
9H6Y|1|2|C|614
9H6Y|1|2|G|615
9H6Y|1|2|G|616
9H6Y|1|2|U|617
9H6Y|1|2|A|618
9H6Y|1|2|A|619
9H6Y|1|2|U|620
9H6Y|1|2|U|621
9H6Y|1|2|C|622

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain Z

Small ribosomal subunit protein uS12

Chain i

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain j

Eukaryotic translation initiation factor 4C