IL_9H6Y_046

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_046 not in the Motif Atlas

Geometric match to IL_9PN5_182

Geometric discrepancy: 0.0946

The information below is about IL_9PN5_182

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9H6Y|1|2|A|918
9H6Y|1|2|G|919
*
9H6Y|1|2|C|1015
9H6Y|1|2|A|1016
9H6Y|1|2|U|1017
9H6Y|1|2|U|1018

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS15

Chain Y

Small ribosomal subunit protein uS8

Chain c

Small ribosomal subunit protein eS27