IL_9H6Y_055
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H6Y_055 not in the Motif Atlas
- Homologous match to IL_9PN5_192
- Geometric discrepancy: 0.1184
- The information below is about IL_9PN5_192
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9H6Y|1|2|C|1094
9H6Y|1|2|G|1095
9H6Y|1|2|A|1096
9H6Y|1|2|U|1097
*
9H6Y|1|2|G|1127
9H6Y|1|2|C|1128
9H6Y|1|2|A|1129
9H6Y|1|2|G|1130
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS2
- Chain D
- Small ribosomal subunit protein eS1
- Chain P
- Small ribosomal subunit protein uS15
- Chain b
- Small ribosomal subunit protein eS26
- Chain c
- Small ribosomal subunit protein eS27
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