IL_9H6Y_072

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

9H6Y|1|2|U|1490, 9H6Y|1|2|G|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|U|1329
9H6Y|1|2|G|1330
9H6Y|1|2|G|1331
*
9H6Y|1|2|U|1488
9H6Y|1|2|C|1489
9H6Y|1|2|U|1490
9H6Y|1|2|G|1491
9H6Y|1|2|U|1492
9H6Y|1|2|G|1493
9H6Y|1|2|A|1494

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain M

Small ribosomal subunit protein eS10

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein

Chain j

Eukaryotic translation initiation factor 4C