IL_9H6Y_087

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9H6Y|1|2|C|1696, 9H6Y|1|2|A|1829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_087 not in the Motif Atlas

Homologous match to IL_9H3G_233

Geometric discrepancy: 0.2082

The information below is about IL_9H3G_233

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

9H6Y|1|2|C|1695
9H6Y|1|2|C|1696
9H6Y|1|2|G|1697
*
9H6Y|1|2|C|1827
9H6Y|1|2|A|1828
9H6Y|1|2|A|1829
9H6Y|1|2|G|1830

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

Linear mRNA

Chain b

Small ribosomal subunit protein eS26

Chain j

Eukaryotic translation initiation factor 4C