IL_9H74_034

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9H74|1|2|A|618, 9H74|1|2|U|620, 9H74|1|2|U|621

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_034 not in the Motif Atlas

Homologous match to IL_9H3G_187

Geometric discrepancy: 0.1435

The information below is about IL_9H3G_187

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9H74|1|2|G|601
9H74|1|2|U|602
9H74|1|2|C|603
9H74|1|2|G|604
9H74|1|2|C|605
9H74|1|2|A|606
9H74|1|2|G|607
*
9H74|1|2|C|614
9H74|1|2|G|615
9H74|1|2|G|616
9H74|1|2|U|617
9H74|1|2|A|618
9H74|1|2|A|619
9H74|1|2|U|620
9H74|1|2|U|621
9H74|1|2|C|622

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain Z

40S ribosomal protein S23

Chain i

40S ribosomal protein S30

Chain j

Eukaryotic translation initiation factor 1A, X-chromosomal