IL_9H74_060

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9H74|1|2|C|1211, 9H74|1|2|C|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_060 not in the Motif Atlas

Homologous match to IL_9H3G_212

Geometric discrepancy: 0.1153

The information below is about IL_9H3G_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9H74|1|2|A|1210
9H74|1|2|C|1211
9H74|1|2|C|1212
9H74|1|2|A|1213
*
9H74|1|2|U|1676
9H74|1|2|C|1677
9H74|1|2|C|1678
9H74|1|2|C|1679
9H74|1|2|U|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain H

Ribosomal protein S5

Chain S

Ribosomal protein S16

Chain b

40S ribosomal protein S26

Chain d

40S ribosomal protein S28