3D structure

PDB id
9H74 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGG*UCUGUGA
Length
10 nucleotides
Bulged bases
9H74|1|2|U|1490, 9H74|1|2|G|1493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9H74|1|2|U|1329
9H74|1|2|G|1330
9H74|1|2|G|1331
*
9H74|1|2|U|1488
9H74|1|2|C|1489
9H74|1|2|U|1490
9H74|1|2|G|1491
9H74|1|2|U|1492
9H74|1|2|G|1493
9H74|1|2|A|1494

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain F
Ribosomal protein S3
Chain M
Small ribosomal subunit protein eS10
Chain W
40S ribosomal protein uS10
Chain e
40S ribosomal protein S29
Chain f
Ribosomal protein S27a
Chain j
Eukaryotic translation initiation factor 1A, X-chromosomal

Coloring options:

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