IL_9H74_079

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACC*GCGUC

Length

9 nucleotides

Bulged bases

9H74|1|2|U|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_079 not in the Motif Atlas

Geometric match to IL_1CSL_001

Geometric discrepancy: 0.2472

The information below is about IL_1CSL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9H74|1|2|G|1409
9H74|1|2|A|1410
9H74|1|2|C|1411
9H74|1|2|C|1412
*
9H74|1|2|G|1425
9H74|1|2|C|1426
9H74|1|2|G|1427
9H74|1|2|U|1428
9H74|1|2|C|1429

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Ribosomal protein S16

Chain V

40S ribosomal protein eS19