IL_9H9H_035

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9H9H|1|A|U|701, 9H9H|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9H_035 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.1963

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9H9H|1|A|U|684
9H9H|1|A|G|685
9H9H|1|A|U|686
9H9H|1|A|A|687
9H9H|1|A|G|688
*
9H9H|1|A|C|699
9H9H|1|A|G|700
9H9H|1|A|U|701
9H9H|1|A|A|702
9H9H|1|A|G|703
9H9H|1|A|A|704
9H9H|1|A|G|705
9H9H|1|A|A|706

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain Z

Translation initiation factor IF-3