IL_9H9H_063

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9H_063 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.1883

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9H9H|1|A|A|1430
9H9H|1|A|A|1431
9H9H|1|A|G|1432
9H9H|1|A|A|1433
9H9H|1|A|A|1434
9H9H|1|A|G|1435
*
9H9H|1|A|C|1466
9H9H|1|A|C|1467
9H9H|1|A|A|1468
9H9H|1|A|C|1469
9H9H|1|A|U|1470

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20