IL_9H9N_036
3D structure
- PDB id
- 9H9N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 9H9N|1|A|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H9N_036 not in the Motif Atlas
- Geometric match to IL_5J7L_035
- Geometric discrepancy: 0.1459
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9H9N|1|A|U|684
9H9N|1|A|G|685
9H9N|1|A|U|686
9H9N|1|A|A|687
9H9N|1|A|G|688
*
9H9N|1|A|C|699
9H9N|1|A|G|700
9H9N|1|A|U|701
9H9N|1|A|A|702
9H9N|1|A|G|703
9H9N|1|A|A|704
9H9N|1|A|G|705
9H9N|1|A|A|706
Current chains
- Chain A
- 16S RNA (1078-MER)
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
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