IL_9H9N_038
3D structure
- PDB id
- 9H9N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H9N_038 not in the Motif Atlas
- Geometric match to IL_8CRE_438
- Geometric discrepancy: 0.0849
- The information below is about IL_8CRE_438
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9H9N|1|A|C|779
9H9N|1|A|A|780
9H9N|1|A|A|781
9H9N|1|A|A|782
9H9N|1|A|C|783
*
9H9N|1|A|G|799
9H9N|1|A|G|800
9H9N|1|A|U|801
9H9N|1|A|A|802
9H9N|1|A|G|803
Current chains
- Chain A
- 16S RNA (1078-MER)
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
- Chain U
- Small ribosomal subunit protein bS21
Coloring options: