IL_9HA1_001

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA1_001 not in the Motif Atlas

Homologous match to IL_7A0S_001

Geometric discrepancy: 0.2773

The information below is about IL_7A0S_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA1|1|A|G|24
9HA1|1|A|U|25
9HA1|1|A|G|26
9HA1|1|A|G|27
9HA1|1|A|A|28
9HA1|1|A|U|29
9HA1|1|A|G|30
*
9HA1|1|A|C|510
9HA1|1|A|U|511
9HA1|1|A|G|512
9HA1|1|A|A|513
9HA1|1|A|A|514
9HA1|1|A|A|515
9HA1|1|A|C|516

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20