3D structure

PDB id
9HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.17 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA1_001 not in the Motif Atlas
Homologous match to IL_7A0S_001
Geometric discrepancy: 0.2773
The information below is about IL_7A0S_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_04021.2
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9HA1|1|A|G|24
9HA1|1|A|U|25
9HA1|1|A|G|26
9HA1|1|A|G|27
9HA1|1|A|A|28
9HA1|1|A|U|29
9HA1|1|A|G|30
*
9HA1|1|A|C|510
9HA1|1|A|U|511
9HA1|1|A|G|512
9HA1|1|A|A|513
9HA1|1|A|A|514
9HA1|1|A|A|515
9HA1|1|A|C|516

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20

Coloring options:


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