3D structure

PDB id
9HA4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.26 Å

Loop

Sequence
CUAU*AAAUG
Length
9 nucleotides
Bulged bases
9HA4|1|A|U|1554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA4_042 not in the Motif Atlas
Homologous match to IL_5J7L_297
Geometric discrepancy: 0.1718
The information below is about IL_5J7L_297
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_99646.2
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9HA4|1|A|C|1437
9HA4|1|A|U|1438
9HA4|1|A|A|1439
9HA4|1|A|U|1440
*
9HA4|1|A|A|1551
9HA4|1|A|A|1552
9HA4|1|A|A|1553
9HA4|1|A|U|1554
9HA4|1|A|G|1555

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4844 s
Application loaded.