IL_9HA4_061

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9HA4|1|A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA4_061 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.326

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HA4|1|A|G|2737
9HA4|1|A|A|2738
9HA4|1|A|U|2739
9HA4|1|A|A|2740
9HA4|1|A|A|2741
9HA4|1|A|G|2742
*
9HA4|1|A|C|2762
9HA4|1|A|G|2763
9HA4|1|A|A|2764
9HA4|1|A|A|2765
9HA4|1|A|A|2766
9HA4|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13