IL_9HA5_058

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9HA5|1|A|A|1801, 9HA5|1|A|C|1816, 9HA5|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA5_058 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1665

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9HA5|1|A|U|1798
9HA5|1|A|G|1799
9HA5|1|A|C|1800
9HA5|1|A|A|1801
9HA5|1|A|A|1802
9HA5|1|A|A|1803
9HA5|1|A|C|1804
*
9HA5|1|A|G|1813
9HA5|1|A|G|1814
9HA5|1|A|A|1815
9HA5|1|A|C|1816
9HA5|1|A|G|1817
9HA5|1|A|U|1818
9HA5|1|A|A|1819
9HA5|1|A|U|1820
9HA5|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2